PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G13560.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 895aa    MW: 98572.1 Da    PI: 7.7127
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G13560.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.37e-24147248199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++ +++a+e+       +  ++ +++l+ +d++g +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F   + 
  OGLUM12G13560.1 147 FCKTLTASDTSTHGGFSVLRRHADEClppldmsQ--HPPTQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFL--RG 236
                      99*****************************544..455569************************************************..44 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      +++el+v+v+r+
  OGLUM12G13560.1 237 ENGELRVGVRRA 248
                      9999*****996 PP
2Auxin_resp1125.7e-37273355183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+ha++t+++F+v+Y+Pr+s+seFvv+++ +e++lk++ s+GmRfkm fe+e+++e+r++Gt+vgv d+dp+ W +SkWrsLk
  OGLUM12G13560.1 273 AWHAVNTGTMFTVYYKPRTSPSEFVVPRDLYEESLKRNHSIGMRFKMTFEGEEAAEQRFTGTIVGVGDSDPSGWADSKWRSLK 355
                      89*******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 895 aa     Download sequence    
MAAAATAAAS PVEGLTGGGG GGGGGVDGLF VELWRACAGP LVTVPAVGER VFYLPQGHIE  60
QVEASTNQVA EQQGAPLYNL PWKIPCKVMN VELKAEPDTD EVYAQLTLLP EKQQDGNGSG  120
NGYVSKDKVE EEVVPPAATE RPRVHSFCKT LTASDTSTHG GFSVLRRHAD ECLPPLDMSQ  180
HPPTQELVAK DLHGVEWRFR HIFRGQPRRH LLQSGWSVFV SAKRLVAGDA FIFLRGENGE  240
LRVGVRRAMR QQANIPSSVI SSHSMHLGVL ATAWHAVNTG TMFTVYYKPR TSPSEFVVPR  300
DLYEESLKRN HSIGMRFKMT FEGEEAAEQR FTGTIVGVGD SDPSGWADSK WRSLKVRWDE  360
AASVPRPDRV SPWQIEPANS PSPVNPLPAP RTKRARPNVL ASSPDLSAVN KEVASKVMAN  420
SQQNGLPRAF HSQENMNLRS RFGDSNELNT SQKLTMWSSG SNQEKNNVSV QRELGSQSWM  480
QMRRPDGSSE ILSGFQPLKD TRNPLSSFPS QISGNRSNTW NTINVHYPDQ NANHNMYPGT  540
WSLMPPNTGF GVNQQNYLMT PDITLPQRSL NAKFGGNGAF TSLRAHGIDQ RSSGWLGHIE  600
PSSHIDDASS SLIKPQPLVI DHNVQKAKGS SCMLFGISLD SPAKPELLIS PPSVAFDGKL  660
QQDALDEDEC SDPSKTVKPL DGAQHDSATE KHQSCPDGTK NIQSKQQNGS SRSCKKVHKQ  720
GIALGRSIDL TKFTCYDELI AELDQMFDFN GELNSSSKNW MVVYTDNEGD MMLVGDDPWN  780
EFCNMVHKIF IYTREEVQKM NPGALNSRSF VVCKNRRRHI HGRKESFRGV VVVAGALYVS  840
GKPRSTPFVD GACPGISCPL FVFDKFWVCF VEVLSYCMIC PVVVKGAEAK LPRPY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0ARF family protein