PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G13820.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRF

Protein Properties

Length: 411aa MW: 43958.1 Da PI: 9.2388

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G13820.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74.2	1.4e-23	108	152	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr+++ ++k+CErH++rgr+rsrk++e OGLUM12G13820.1 108 DSEPGRCRRTDGKKWRCSRDAVVDQKYCERHINRGRHRSRKHVEG 152 689***************************************986 PP
2	QLQ	61.3	2.7e-21	37	73	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yK+++an+PvP++Ll++i++ OGLUM12G13820.1 37 GPFTPTQWMELEHQALIYKHIVANAPVPARLLLPIRR 73 59*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MAMATPTTNG SFLLGSGLDC GSSDVARMQG VLARVRGPFT PTQWMELEHQ ALIYKHIVAN 60 APVPARLLLP IRRSLHPPVF PHFSSGGILG SSSLGWGSFQ LGYSGSADSE PGRCRRTDGK 120 KWRCSRDAVV DQKYCERHIN RGRHRSRKHV EGQSSHAAKA TVPAIAQPPI GASNGKLSGS 180 HGVSNELTKT LATNRMMLDK ANLIERSQDY TNQQHNILQN NTKGDNWSEE MSSQADYAVI 240 PAGSLMNTPQ SANLNPIPQQ QRCKQSLFGK GIQHDDIQLS ISIPVDNSDL PTNYNKAQMD 300 HVVGGSSNGG NNTRASWIPG SWEASIGGPL GEFFTNTSSA SDDKGKSRHP PSLNLLADGH 360 TTSPQLQSPT GVLQMTSFSS VPSSTVSSPA GSLCNGLLTS GLVNAQTVQT L

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MAMATPTTNG SFLLGSGLDC GSSDVARMQG VLARVRGPFT PTQWMELEHQ ALIYKHIVAN  60
APVPARLLLP IRRSLHPPVF PHFSSGGILG SSSLGWGSFQ LGYSGSADSE PGRCRRTDGK  120
KWRCSRDAVV DQKYCERHIN RGRHRSRKHV EGQSSHAAKA TVPAIAQPPI GASNGKLSGS  180
HGVSNELTKT LATNRMMLDK ANLIERSQDY TNQQHNILQN NTKGDNWSEE MSSQADYAVI  240
PAGSLMNTPQ SANLNPIPQQ QRCKQSLFGK GIQHDDIQLS ISIPVDNSDL PTNYNKAQMD  300
HVVGGSSNGG NNTRASWIPG SWEASIGGPL GEFFTNTSSA SDDKGKSRHP PSLNLLADGH  360
TTSPQLQSPT GVLQMTSFSS VPSSTVSSPA GSLCNGLLTS GLVNAQTVQT L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	2e-43	GRF family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G13820.1