PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G15010.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 198aa    MW: 22623.4 Da    PI: 4.7931
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G15010.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.71.3e-101241631054
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++RR+riN+++  L+el+P+      +K++ +++Le+A++Y+k L
  OGLUM12G15010.1 124 KKRRQRINERLRILQELIPNG-----TKVDISTMLEEAIQYVKFL 163
                      8******************97.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    
MECSSFEAIC NESEMIAHLQ SLFWSSSDAD PCFGSSSFSL ISSEGYDTMT SEFVNSSTNV  60
CFDYQDDSFV SAVETTIGNK RKVQMDTENE LMMNRSKEVR TKMLVSKVCK HSVSAENSQS  120
YYAKKRRQRI NERLRILQEL IPNGTKVDIS TMLEEAIQYV KFLHLQIKLL SSDEMWMYAP  180
LAFDTGNNRG YQNSVSQE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-36bHLH family protein