PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G15400.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 412aa MW: 43942.7 Da PI: 6.9248

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G15400.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.6	3.8e-15	36	83	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+lv + + G g+W+ +ar g+ R++k+c++rw +yl OGLUM12G15400.1 36 KGLWSPEEDEKLVAYMLRSGQGSWSDVARNAGLQRCGKSCRLRWINYL 83 678*******************************************97 PP
2	Myb_DNA-binding	50.4	5e-16	89	132	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E++l+v +++ lG++ W+ Ia++++ gRt++++k++w++ OGLUM12G15400.1 89 RGAFSPQEEDLIVSLHAILGNR-WSQIAARLP-GRTDNEIKNFWNS 132 89******************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence
MRKPDCGGGG GAAKGGGVLG VAGGNNAAVV GGKVRKGLWS PEEDEKLVAY MLRSGQGSWS 60 DVARNAGLQR CGKSCRLRWI NYLRPDLKRG AFSPQEEDLI VSLHAILGNR WSQIAARLPG 120 RTDNEIKNFW NSTIKKRLKI SSSSASPATT TDCASPPEHK LGAVVDLAGC GGGGGATDDV 180 VVGTANAAMK SMWVDSSSSS SSSSSSMQSR PSIMAAAAAG RSYGGLLPLP DQVCGVDTSP 240 PPPFFHDHSI SIKQGYYGST GHHHHHAIAA MDGSSFIGDH HHHSSSILFG GAAVPPLLDH 300 QTILNDDDDH PNKTGSNTTA ATLSSNITDN SNSNKNNSDN NNNISSSCCI SLMNSSSNMI 360 YWEGHHQQQQ QQHQMLQQQQ QQHMSRNVMG EWDLEELMKD VSSLPFLDFQ VE

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence

MRKPDCGGGG GAAKGGGVLG VAGGNNAAVV GGKVRKGLWS PEEDEKLVAY MLRSGQGSWS  60
DVARNAGLQR CGKSCRLRWI NYLRPDLKRG AFSPQEEDLI VSLHAILGNR WSQIAARLPG  120
RTDNEIKNFW NSTIKKRLKI SSSSASPATT TDCASPPEHK LGAVVDLAGC GGGGGATDDV  180
VVGTANAAMK SMWVDSSSSS SSSSSSMQSR PSIMAAAAAG RSYGGLLPLP DQVCGVDTSP  240
PPPFFHDHSI SIKQGYYGST GHHHHHAIAA MDGSSFIGDH HHHSSSILFG GAAVPPLLDH  300
QTILNDDDDH PNKTGSNTTA ATLSSNITDN SNSNKNNSDN NNNISSSCCI SLMNSSSNMI  360
YWEGHHQQQQ QQHQMLQQQQ QQHMSRNVMG EWDLEELMKD VSSLPFLDFQ VE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12870.1	4e-64	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G15400.1