PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G17720.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 211aa    MW: 23896.2 Da    PI: 8.2755
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G17720.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.8e-173277148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rgr+++ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++
  OGLUM12G17720.1 32 RGRMSPHEERLILELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 77
                     89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    
MDRAGGPATG LNRTGKSCRL RWVNYLHPGL KRGRMSPHEE RLILELHARW GNRWSRIARR  60
LPGRTDNEIK NYWRTHMRKK AQERKSNMSP SSSSSSLTYQ SCHPETPSMI IGIEEQELHG  120
GSGCITSIMK STPVDMDGYP MDQIWMEIEA PNVLPGPCFD EAKDSASNSL SGPLLPYPMW  180
DYYCPETCLR MDDEIKVAPQ FGYGKGVGPC Y
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.38e-51MYB_related family protein