PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G17840.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 354aa MW: 35826.7 Da PI: 8.8942

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G17840.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.3	7.1e-38	98	155	5	62
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +l+cprCdstntkfCy+nnyslsqPr+fCkaCrryWt+GGalrnvPvGgg+r+n k+s OGLUM12G17840.1 98 TLRCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNTKRS 155 679***************************************************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MVFSSLPIFL DPPNWTQMQQ QPLQCLIGGG GGGGGGSDHH HLMPPPSGLA PLPSAAGAAD 60 TAASAPAAAA QQQQPRPAVV SMSERARLAR VPLPEPGTLR CPRCDSTNTK FCYFNNYSLS 120 QPRHFCKACR RYWTRGGALR NVPVGGGCRR NTKRSTKKSS SSSSSRQGGG AGNAAAATSS 180 SSSTSTSTTA TTSSAAAAAA AADVIASMQA GGALLPHHLI GGLPSSAAAA AALEASLEGY 240 HHHHHHHGHG HQLPFLQPPP FLQQGLHGYH FADGDVIAGG GALADGGFPR GVASGLLAQL 300 ASVKMEEHGT NNGGGVGGGF VGAHEQYWHG GNGGGGWPAE FLSGFSSSSS GNVL

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MVFSSLPIFL DPPNWTQMQQ QPLQCLIGGG GGGGGGSDHH HLMPPPSGLA PLPSAAGAAD  60
TAASAPAAAA QQQQPRPAVV SMSERARLAR VPLPEPGTLR CPRCDSTNTK FCYFNNYSLS  120
QPRHFCKACR RYWTRGGALR NVPVGGGCRR NTKRSTKKSS SSSSSRQGGG AGNAAAATSS  180
SSSTSTSTTA TTSSAAAAAA AADVIASMQA GGALLPHHLI GGLPSSAAAA AALEASLEGY  240
HHHHHHHGHG HQLPFLQPPP FLQQGLHGYH FADGDVIAGG GALADGGFPR GVASGLLAQL  300
ASVKMEEHGT NNGGGVGGGF VGAHEQYWHG GNGGGGWPAE FLSGFSSSSS GNVL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	1e-36	Dof family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G17840.1