PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G18480.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 363aa MW: 39982.6 Da PI: 6.9764

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G18480.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.5	6.1e-07	71	92	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+k+Fs++ +L+ H+++H OGLUM12G18480.1 71 QCQMCSKVFSTSGSLREHMMMH 92 7*******************99 PP
2	zf-C2H2	16.4	2.5e-05	275	297	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ CgksF + L H+r+H OGLUM12G18480.1 275 HRCNTCGKSFGSGQALGGHMRRH 297 79********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MAPRGKPWKH CCNKCDKSFR SGNALGGHMS CHRSVGNQPK STSSLPTVVD LHMPLLSSCD 60 DNLLLLPPET QCQMCSKVFS TSGSLREHMM MHGGEKVVVK AEEEAAGLIE ALGIADSMQD 120 VMVFSSVKRK RSFRSKRQTP ALSLEEIEAA DALLLLSGCF DKTSAYEDCY LGDIEDSSLR 180 SIVLTEVNMN AVDRCSVRSV GSKEPINDNN SGYKDCYGQS DKENCLIVPK EEMDPNDFDH 240 ELVRDAALRK PRTDNSDEEM KFGDLPAAAM KDNSHRCNTC GKSFGSGQAL GGHMRRHYVR 300 KCNRQRGVAD RAGSVLMKVQ KLKLRLDPIL FDVTLPALTD GDCCISVGVK PEPQLWCVTS 360 NLQ

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MAPRGKPWKH CCNKCDKSFR SGNALGGHMS CHRSVGNQPK STSSLPTVVD LHMPLLSSCD  60
DNLLLLPPET QCQMCSKVFS TSGSLREHMM MHGGEKVVVK AEEEAAGLIE ALGIADSMQD  120
VMVFSSVKRK RSFRSKRQTP ALSLEEIEAA DALLLLSGCF DKTSAYEDCY LGDIEDSSLR  180
SIVLTEVNMN AVDRCSVRSV GSKEPINDNN SGYKDCYGQS DKENCLIVPK EEMDPNDFDH  240
ELVRDAALRK PRTDNSDEEM KFGDLPAAAM KDNSHRCNTC GKSFGSGQAL GGHMRRHYVR  300
KCNRQRGVAD RAGSVLMKVQ KLKLRLDPIL FDVTLPALTD GDCCISVGVK PEPQLWCVTS  360
NLQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03510.1	1e-07	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G18480.1