PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G18780.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 245aa MW: 24940.1 Da PI: 7.8031

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G18780.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.00069	87	109	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F + L H +H OGLUM12G18780.1 87 HRCSVCGKAFASYQALGGHKASH 109 79**********99998888877 PP
2	zf-C2H2	11	0.0014	153	172	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ Cgk F++ L H OGLUM12G18780.1 153 HECNVCGKAFPTGQALGGHK 172 78*********988886665 PP

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence
MAVEAVLEAS RSSSEEEAEV IVTHGGGGGG GGQVEVWGKR KRSRRRRPQL PPSEEEYLAL 60 CLLMLARGRR DGDDVAASAS AAAAVEHRCS VCGKAFASYQ ALGGHKASHR KPPPPPPAMV 120 DDDEVVVETK PAAIATPSSS ASGVSGGGGG RAHECNVCGK AFPTGQALGG HKRCHYDGTI 180 GSAAGAGASK PAAKTTVAVA ASRGFDLNLP ALPDVAAAAD QRCAAEDDEV LSPLAFKKPR 240 LMIPA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49930.1	2e-26	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G18780.1