PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G19480.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 235aa MW: 25634.1 Da PI: 8.1397

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G19480.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.5	1.8e-06	156	182	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h E+rR +riN++f L++l+P + OGLUM12G19480.1 156 THGLTEKRRGSRINEKFKMLQRLVPGC 182 78999********************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence
MMSFPYSSGD LGEATTAAAP AVDMITLDQM FRDYDASTGD DLFELVWESC GGGEIDSGAG 60 EVQPAGVPCC RRLLPGSSPE PTSEDEMAAW LSTIVTGSGG SGGDDVAAGG DHQDPAVKKP 120 DGEPLTEKMD KKLPTRTEER RRVKHKARRN PGYAETHGLT EKRRGSRINE KFKMLQRLVP 180 GCDKAMYPTM VRPAAVYPVV QPRPAASQGG LHRHRRLMVV VSVHHRCRCF RLGRQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36930.1	1e-07	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G19480.1