PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G19500.2
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 310aa    MW: 33463.1 Da    PI: 7.9891
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G19500.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.41.6e-15122170355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++h+  Er+RR +iN+ + +L++l+P +    +k ++ a++L k+++Y+ksLq
  OGLUM12G19500.2 122 QTHSLTERKRRCKINENLKTLQQLVPGC----DKSNNQASTLDKTIRYMKSLQ 170
                      79*************************9....788*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MEMTSYNDVD AGDMFAAADY YSAGDGGDLF DMVWPGRRRR REEDNTSGCL PLSPPPPPEL  60
AVDDQLPAGG DGGGSGGEPV AVAVAEDDDS GERWTEDQGR RSESSKERRK ITRARRSSRY  120
SQTHSLTERK RRCKINENLK TLQQLVPGCD KSNNQASTLD KTIRYMKSLQ QHVQAMSVGC  180
IMKPAAAGVS YHPFLQPPPY VRPAIAAGGA APAGMVPRPL PSSMVPFAPV LPMVVHHPAP  240
LMMMPAAPAP LMTYPGAGVA GPKAVTCWSS WRRSPQDPGM PLLDLPPPPL PLSTTTTMTC  300
SLTSSFCWCR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.13e-16bHLH family protein