PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G19510.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 326aa MW: 33734.7 Da PI: 10.3495

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G19510.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.5	2.8e-14	146	193	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ahn E+rRR +i ++f +L++l+P + + K + a++L ++++Y+ksLq OGLUM12G19510.1 146 AHNLTEKRRRFKITERFRTLQRLVPGC----DNKSNQASTLDQTIQYMKSLQ 193 8***********************9....89****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence
MRQGGGGGAC SFNQPPPLLP PAGIIVPGTT TTTLLPEQPV VDDHLPAAAA APPSEEEMAA 60 WLYPIVGGHQ VAAGGWLSPE AGDDRRAAPP APEKKQMDNM PAVASPTTTM NKDEASDDSG 120 ERKKKKKKKA SSAAGKASRH RHAAGAHNLT EKRRRFKITE RFRTLQRLVP GCDNKSNQAS 180 TLDQTIQYMK SLQHQLEATS AVGPPAAAVL YPAAVHPQSY MHPPAPPPPV AGAAAPVTMA 240 PMPAGMVLAA APPGAAPPPG PPATMMPFGA MLPYPPYPAV LLPPPPATLY GRPPAAAPSV 300 AARRHGSTSG GARISKSSSS SLRKEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	121	127	ERKKKKK
2	122	128	RKKKKKK
3	123	129	RKKKKKK
4	151	156	EKRRRF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.1	4e-12	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G19510.1