PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G20110.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 466aa MW: 49203.9 Da PI: 6.6706

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G20110.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	53.9	3.2e-17	278	324	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq OGLUM12G20110.1 278 VHNLSERRRRDRINEKMKALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 324 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence
MNQFVPDWNT TSMGDGFAPL GEDDGLVELL WCNGHVVMQS QAPRKPPRPE RTTAAAAAMA 60 EDESASWFQY PVDDVLEKDL FTELFGEMTA AGGGGGDVRR AACKEERGAV AAFQSRMMPP 120 PWPARGKAEF GDIDDVCGVS EVVMAAKMDG EAKVAAAEAV GESSMLTIGS SICGSNHVQT 180 PPAGAAPPPV GNGKVAAARR AHDTATVASS SMRSRSCTAK AEPRDVAAAG GGGKRKHRGA 240 AAMESGSPSE DVEFESAAAM CSPAQKTTTA KRRRAAEVHN LSERRRRDRI NEKMKALQEL 300 IPHCNKTDKA SMLDEAIEYL KSLQLQLQMM WMGGGMAPPA VMFPAAGVHQ YMQRMGAVGM 360 GPPHMASLPR MPPFMAPPPA AVQSSPVVSM ADPYARCLAV DHLQPPSPML AAAKNLQQQQ 420 NTAEPPPPPP AGSLPPAATA QPLTPDDILH KKYDNCSKSE SKGGTS

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence

MNQFVPDWNT TSMGDGFAPL GEDDGLVELL WCNGHVVMQS QAPRKPPRPE RTTAAAAAMA  60
EDESASWFQY PVDDVLEKDL FTELFGEMTA AGGGGGDVRR AACKEERGAV AAFQSRMMPP  120
PWPARGKAEF GDIDDVCGVS EVVMAAKMDG EAKVAAAEAV GESSMLTIGS SICGSNHVQT  180
PPAGAAPPPV GNGKVAAARR AHDTATVASS SMRSRSCTAK AEPRDVAAAG GGGKRKHRGA  240
AAMESGSPSE DVEFESAAAM CSPAQKTTTA KRRRAAEVHN LSERRRRDRI NEKMKALQEL  300
IPHCNKTDKA SMLDEAIEYL KSLQLQLQMM WMGGGMAPPA VMFPAAGVHQ YMQRMGAVGM  360
GPPHMASLPR MPPFMAPPPA AVQSSPVVSM ADPYARCLAV DHLQPPSPML AAAKNLQQQQ  420
NTAEPPPPPP AGSLPPAATA QPLTPDDILH KKYDNCSKSE SKGGTS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	271	287	KRRRAAEVHNLSERRRR
2	272	288	KRRRAAEVHNLSERRRR
3	283	288	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	2e-26	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G20110.1