PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G20170.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LSD

Protein Properties

Length: 152aa MW: 16012.8 Da PI: 8.4389

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G20170.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	43.7	4.4e-14	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr++L YPrGApsV+Ca+C++V OGLUM12G20170.2 7 CHGCRNILLYPRGAPSVCCAVCHAV 31 ************************9 PP
2	zf-LSD1	48.7	1.3e-15	47	71	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+r+A+sVRC++CdtV OGLUM12G20170.2 47 CGGCRTLLMYTRNATSVRCSCCDTV 71 ************************9 PP
3	zf-LSD1	51.2	2.1e-16	85	109	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L+YP+GApsV+Ca+C+++ OGLUM12G20170.2 85 CGQCQTVLMYPYGAPSVKCAICNFI 109 ***********************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence
MQSQIVCHGC RNILLYPRGA PSVCCAVCHA VSSTAPSPGM DIAHLICGGC RTLLMYTRNA 60 TSVRCSCCDT VNLVRPVSSI AHLNCGQCQT VLMYPYGAPS VKCAICNFIT NTGPTIQSQN 120 VTVVVENPMT VDAKGKLVSN VVVGVTTGGK KY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.1	3e-49	LSD family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G20170.2