PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G21080.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 309aa    MW: 34728.3 Da    PI: 7.8808
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G21080.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.47e-17239273135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  OGLUM12G21080.1 239 CTHCLSYKTPQWRTGPLGPKTLCNACGVRFKSGRL 273
                      *******************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MDVHPPNAAA SSLEELFPHQ PATESDRSGI EWLSVYVEDC LSTSASCTNP VSAELPPITM  60
ASQGAAKPKL PPRSSTNARK KKRSLASVIS DTDDQHCITL FVEPPLLLLD HKDWLAESEL  120
ILPKKDKDEE LVQEQEQEEE ENYKMSAGMQ FQQEQLVITC SYCLSSQSPQ WWDGPSGPTC  180
DACRLRIEAR NGHTTSSKKR YGQEIDKEQD IGKRRDKKKI KKAVYVNDGL LSEEPTKRCT  240
HCLSYKTPQW RTGPLGPKTL CNACGVRFKS GRLLPEYRPA NSPTFVSDIH SNSHKKVMQL  300
RNSVPHPRK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214222RRDKKKIKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.18e-35GATA family protein