PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G21470.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 311aa MW: 32394.3 Da PI: 8.8531

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G21470.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48.7	1.4e-15	166	212	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++ErrRR++iN++f eL +++P + kK++Ka+iL Av+Y+k+Lq OGLUM12G21470.1 166 DHIIAERRRREKINQRFIELSTVIPGL-----KKMDKATILGDAVKYVKELQ 212 5999*********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence
MDDSSFFMQW AMDTLHQLPS DSTAAAYATD VAGDAFPSLQ ALRNASAAGG GGGGFRDLTV 60 QVDQVHRANS WSSSDSPGGA AATAAAGWSP HVTHGGGGGG RGHRPMSWNF SAASAQPTTE 120 DSGGGGGGGV VPAPPQAKET ATARAAPVKK GGGGSSSAAA PGYVQDHIIA ERRRREKINQ 180 RFIELSTVIP GLKKMDKATI LGDAVKYVKE LQEKVKTLEE EDGGRAAAMV VRKSSCSGRQ 240 CDGEGRGSRV PEMEVRVWER SVLVRVQCGN ARGLLVRLLS EVEELRLAIT HTSVMPFPAS 300 TVIITITAKA S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	171	176	ERRRRE
2	172	177	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	2e-31	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G21470.1