PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G21540.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 244aa MW: 26931.4 Da PI: 9.2733

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G21540.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.1	8.3e-18	17	65	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+e+de+l +++q+G+g +W + +r++g++R++k+c++rw++yl OGLUM12G21540.1 17 RGAWTAEDDERLRSYIQQHGTGgNWMALPRKVGLRRCGKSCRLRWLNYL 65 89*********************************************97 PP
2	Myb_DNA-binding	41	4.5e-13	72	114	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g+++ +d l++ +++ G++ W++Ia++++ gRt++++ ++w++ OGLUM12G21540.1 72 GAFSDHDDRLILALHAAVGTR-WSLIAAHLP-GRTDNHLNNYWNN 114 799****************.*****.**********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence
MGRSSACCDK AAVKPKRGAW TAEDDERLRS YIQQHGTGGN WMALPRKVGL RRCGKSCRLR 60 WLNYLRPGIR HGAFSDHDDR LILALHAAVG TRWSLIAAHL PGRTDNHLNN YWNNKKKKTP 120 PLLLAAHQLH VASTSSGGMH VGVGEGHGYD DVFAAAHSLS STAATSFSSG GATELDEIFR 180 STGTSGGDCS SSAQTRSTDD ALMMMMMMMM MMNWHNHQNQ LQLQGELQGV QQQQQQFGFG 240 MPYW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	4e-53	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G21540.1