PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS95870

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 318aa MW: 35521.5 Da PI: 6.7613

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS95870	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.5	2.1e-15	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l++++++ G+g +W + +++ g++R++k+c++rw++yl OIS95870 14 KGPWSPEEDAKLKEYIEKSGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	35.7	2.1e-11	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ eEd + + + G++ W+ Ia ++ gRt++++k++w++ OIS95870 69 GEFSDEEDRVICSLYASIGSR-WSIIAGQLP-GRTDNDIKNYWNT 111 789****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence
MGRAPCCDKE NVKKGPWSPE EDAKLKEYIE KSGTGGNWIA LPQKAGLRRC GKSCRLRWLN 60 YLRPNIKHGE FSDEEDRVIC SLYASIGSRW SIIAGQLPGR TDNDIKNYWN TKLKKKLMGF 120 VSSSHKIRPF HQNQHQITTG YNNYYPQILP YSSPSTTLTT LAAYKYSNNN TFPCYETIPT 180 IPSSSFLNTA AAASCTSGIT ASTSPTLQIQ ESNYVGPTTT TTTSSDGSAE YENLDFHSYI 240 YDGVIGNEDD QSNSKFLIEG GGKPINGNGC HVEQQNPLDY SSLEEIKQLI SSNNNNVTCN 300 SNLFLDENKI EEKVMMYY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	8e-77	MYB family protein

Link Out ? help Back to Top
Ensembl	OIS95870