PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIS95896
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 241aa    MW: 28015.9 Da    PI: 8.6879
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIS95896genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.54.1e-291059251
              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
              rienk+nrqvtfskRr g+ KKA+E+SvLCdaeva+i+fs++gk++eyss
  OIS95896 10 RIENKINRQVTFSKRRGGLVKKAHEISVLCDAEVALIVFSHKGKIFEYSS 59
              8***********************************************96 PP
2K-box106.92.4e-35841768100
     K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
               + e++ +e+++ e+akLk++i+ Lqr+++h++GedL+sL+lk+Lq+LeqqL++slk iRs+Kn+l++e+i+ lqkkek++qeen++L+kk++e
  OIS95896  84 NSESSVQENWSLEYAKLKAKIDLLQRNHKHYMGEDLDSLNLKDLQNLEQQLDTSLKLIRSRKNQLMHESISMLQKKEKAIQEENNMLSKKIKE 176
               35677899**********************************************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    
MGRGKVQLRR IENKINRQVT FSKRRGGLVK KAHEISVLCD AEVALIVFSH KGKIFEYSSD  60
SCMEQILERY ERYSYAERRL LASNSESSVQ ENWSLEYAKL KAKIDLLQRN HKHYMGEDLD  120
SLNLKDLQNL EQQLDTSLKL IRSRKNQLMH ESISMLQKKE KAIQEENNML SKKIKEKDKT  180
VGQQAEWHQQ NQVPNSASFL LQPHPCLNIG GNYQEEAEAR RNELDLNLDS LYSCHMGCFA  240
T
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.17e-99MIKC_MADS family protein