PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS95897

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MIKC_MADS

Protein Properties

Length: 244aa MW: 28164.8 Da PI: 7.4463

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS95897	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.4	1.4e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s OIS95897 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCS 59 79***********************************************96 PP
2	K-box	95.3	9.4e-32	82	173	9	100
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + ++++++ +qe+ kLk ++e Lq++qRh+lGedL++L+ k+L+qLe+q+++sl++iRs++++++++++ elq+ke++l e nk+Lr+klee OIS95897 82 QPSTDSQNTYQEYLKLKTRVEVLQQSQRHILGEDLGQLNTKDLEQLERQVDSSLRQIRSTRTQHMIDELTELQQKEESLTEMNKSLRMKLEE 173 567889***********************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFST RGKLYEFCSS 60 SSMSKTVEKY HKYNYAAVEG SQPSTDSQNT YQEYLKLKTR VEVLQQSQRH ILGEDLGQLN 120 TKDLEQLERQ VDSSLRQIRS TRTQHMIDEL TELQQKEESL TEMNKSLRMK LEELGVALQT 180 SWQYEGQSLQ CRQQQPDGFF HPVDCNNTMP IRYNTVLPED AEPSTQRATE VVPGYQFDIG 240 GTRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03710.2	8e-89	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	OIS95897