PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS95909

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 502aa MW: 57467.9 Da PI: 7.3966

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS95909	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.1	0.0012	436	458	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C++ F++ L H r+H OIS95909 436 HECPFCDRIFKSGQALGGHKRSH 458 78******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence
MEENQDLKFV CKLCNKKYPC GKSLGGHMRS HVLTNSAEFD EKIEPQLEKL QSWNRENQHQ 60 SKFELGGNSG YGLRENPKKT WRAVDSTSPL PQEKICQQCG KVFQSLKALC GHMACHSEKD 120 KGTSYSDTEA EEELRLRTRS KTKRYKRIVV KSSVCLVNDN NTINNGSSCV SEIDNEQDQE 180 EVAKCLMMLS RDSWNCVTSF VESSDNNSVV LETKSSSTDM RFTRKDRLKL VYNQDETPRT 240 KKKEDSKLKL SVLDAEAESE NSDSAYFLDE NTIVESDVSV DGLYRNGNNK WSTSKMSDTV 300 WCDESWIDKE KGLNRTKRYP TESRSEYDDY RIASYFDKCE SRKRIKNSSY RLELENESFK 360 KKYECLNCKK NFSSYQALGG HRPCHKKTNA YIESINGSDE NSVDAADCDN KHRETLSSRK 420 PASAEKKSKP KKFKGHECPF CDRIFKSGQA LGGHKRSHFI VSTAQNMNQS SPVKKDVDDL 480 LDLNLPAQVE DEDDEHAHLV SW

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence

MEENQDLKFV CKLCNKKYPC GKSLGGHMRS HVLTNSAEFD EKIEPQLEKL QSWNRENQHQ  60
SKFELGGNSG YGLRENPKKT WRAVDSTSPL PQEKICQQCG KVFQSLKALC GHMACHSEKD  120
KGTSYSDTEA EEELRLRTRS KTKRYKRIVV KSSVCLVNDN NTINNGSSCV SEIDNEQDQE  180
EVAKCLMMLS RDSWNCVTSF VESSDNNSVV LETKSSSTDM RFTRKDRLKL VYNQDETPRT  240
KKKEDSKLKL SVLDAEAESE NSDSAYFLDE NTIVESDVSV DGLYRNGNNK WSTSKMSDTV  300
WCDESWIDKE KGLNRTKRYP TESRSEYDDY RIASYFDKCE SRKRIKNSSY RLELENESFK  360
KKYECLNCKK NFSSYQALGG HRPCHKKTNA YIESINGSDE NSVDAADCDN KHRETLSSRK  420
PASAEKKSKP KKFKGHECPF CDRIFKSGQA LGGHKRSHFI VSTAQNMNQS SPVKKDVDDL  480
LDLNLPAQVE DEDDEHAHLV SW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	2e-67	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIS95909