PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIS95939
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 291aa    MW: 33178.6 Da    PI: 8.1491
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIS95939genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.72.3e-1490141155
               CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++++k+L+
  OIS95939  90 QRMTHIAVERNRRRQMNDYLAVLRSLMPPS---YAQRGDQASIVGGAINFVKELE 141
               79****************************...*******************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    
MALETVVFQQ DPFTYSHKDF YNLGGFFHDY NWDSSHSSIA QSYNNNSSSP EVCTGFLPVE  60
YPPVETPVVS CRRKRRRTKC SKNKEEIENQ RMTHIAVERN RRRQMNDYLA VLRSLMPPSY  120
AQRGDQASIV GGAINFVKEL EQLLQFLEAH KQQVKNQLSP NNASQHPFSK FFTFPQYTTG  180
NNHPVAAANN GATTEERRSA VADIEVTMVE NHANIKVLSR RRPKQLLKIV NWLQAMCFTI  240
LHLTVSTADH MVLYSFSIKV EDNCQLNTVS EIASAVHDMV AMIIKEEAMS C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17377RKRRR
27378RKRRRT
391102RMTHIAVERNRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-75bHLH family protein