PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS95996

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 244aa MW: 27632.6 Da PI: 8.3565

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS95996	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00022	94	116	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k F ++ L H++ H OIS95996 94 FECQYCFKQFANSQALGGHQNAH 116 89******************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence
MAKDVSSTFH SPLSNNGENY ESSSKSCVEN KRLKLFGFEL EPSPKLQKNT KEDQGDHESV 60 NSSSASTVSS GRDQEKLLPA SNGKPDSEEI MKKFECQYCF KQFANSQALG GHQNAHKKER 120 MRKKRLQLQA RKASLSCYLQ PFQNNNNNIN YQFYDPNSFF GNSDQFTVYD ESQISFSPYD 180 QDSHVIAGKW PFQQDSCMFT LTHGEKSREK YSRPAAVMKP ETLPNSASKQ KCNSLDLQLG 240 LGLH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10480.1	5e-18	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIS95996