PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS96138

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 349aa MW: 38952.4 Da PI: 7.1002

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS96138	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55	1.9e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W++++ g+ R+ k+c++rw +yl OIS96138 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	49.4	1e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l OIS96138 67 RGNFTEHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY 60 LRPGIKRGNF TEHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLQKKLKKIQ 120 GHDQKGKSSS SSSQSISKGQ WERRLQTDIH TAKQALCDAL SLNKKTTDFS PNINPSTNSF 180 PVQTSTNTYA SSADNISRLL QNWMKNSPKS SQSISNNSIT SQSSFNNLSI GTGSSSSLSE 240 GTLNAPTPEG LDSLFSFNSS YNSDVSQSMS ADEVVAFTPE NAGIFQVESN KQYLPNFKDE 300 NGFLFQEGIS KQNLETEVPL TLLENWLFDD SNVQTQEELM GIGIGMEWL

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TEHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLQKKLKKIQ  120
GHDQKGKSSS SSSQSISKGQ WERRLQTDIH TAKQALCDAL SLNKKTTDFS PNINPSTNSF  180
PVQTSTNTYA SSADNISRLL QNWMKNSPKS SQSISNNSIT SQSSFNNLSI GTGSSSSLSE  240
GTLNAPTPEG LDSLFSFNSS YNSDVSQSMS ADEVVAFTPE NAGIFQVESN KQYLPNFKDE  300
NGFLFQEGIS KQNLETEVPL TLLENWLFDD SNVQTQEELM GIGIGMEWL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47600.1	1e-100	MYB family protein

Link Out ? help Back to Top
Ensembl	OIS96138