PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS96406

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 394aa MW: 44214.3 Da PI: 8.6921

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS96406	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.7	9.6e-06	60	82	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++C++ F r nL+ H r+H OIS96406 60 YICEICNQGFQRDQNLQMHRRRH 82 89********************9 PP
2	zf-C2H2	17.5	1.2e-05	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ OIS96406 137 WVCEKCSKAYAVQSDYKAHLKTC 159 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence
MLDNSSSSPV GPSSSSEAFN NSAENSGVSN RRKRRPAGTP DPDAEVVSLS PKTLLESDRY 60 ICEICNQGFQ RDQNLQMHRR RHKVPWKLVK RETPQVKKRV FVCPEPTCLH HDPCHALGDL 120 VGIKKHFRRK HSNNKQWVCE KCSKAYAVQS DYKAHLKTCG TRGHSCDCGR VFSRVESFIE 180 HQDNCTVRRS SSTRPDLPAG CSSRTASSTS PSSDTNFSSI APNLPRLTIM PLPNNSDQHN 240 EFPSSNNNDQ QHNLELRLLP SSIACPSRTN DHENQAPHLK LSIGSSTRVV SKDHKELNLA 300 MAEKAYAEEA RRQAKRQIEF AELEFANAKR IRQQAQAEIE RAQNLKEEAT KRISSSILEI 360 TCHACKNKFQ ATDESSQAMS YMSSATTEAE GEHY

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence

MLDNSSSSPV GPSSSSEAFN NSAENSGVSN RRKRRPAGTP DPDAEVVSLS PKTLLESDRY  60
ICEICNQGFQ RDQNLQMHRR RHKVPWKLVK RETPQVKKRV FVCPEPTCLH HDPCHALGDL  120
VGIKKHFRRK HSNNKQWVCE KCSKAYAVQS DYKAHLKTCG TRGHSCDCGR VFSRVESFIE  180
HQDNCTVRRS SSTRPDLPAG CSSRTASSTS PSSDTNFSSI APNLPRLTIM PLPNNSDQHN  240
EFPSSNNNDQ QHNLELRLLP SSIACPSRTN DHENQAPHLK LSIGSSTRVV SKDHKELNLA  300
MAEKAYAEEA RRQAKRQIEF AELEFANAKR IRQQAQAEIE RAQNLKEEAT KRISSSILEI  360
TCHACKNKFQ ATDESSQAMS YMSSATTEAE GEHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-137	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIS96406