PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIS96574
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 559aa    MW: 63401.2 Da    PI: 6.5472
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIS96574genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS240.19.1e-741745532374
      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102
               ++lL  cA a++ g+++++q+lL  l+elas + d+++Rlaa+ + AL ++l++ +s+ ++   ++ ++  n++    +l  f+++ P++++ + +aN  +
  OIS96574 174 EHLLNPCAAAITVGNMNRVQHLLYVLHELASFTCDANHRLAAHGLHALTHHLSSPGSSSSSVGVTNFATYANHKFFRDSLINFNDINPWFRIPNKIANLSV 274
               699***************************************************7777776666666665556666666666******************* PP

      GRAS 103 leavege...ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeeleetgerLakfAeelgvpfefnvlvakrledle 190
               l+ + ++   +++Hi+D+++s+G+QWp+Ll++L+ R+ ++pp +R+T++ + +++            +  +  ++L  fA+++++++++n l    l++l+
  OIS96574 275 LQIIGEQdklKKLHILDIGVSHGVQWPTLLEELTRRSgGPPPLVRLTVITPTTENgefrgtpfvIGPAGYNFSSQLLAFAKAININLQINRLDNFPLQNLN 375
               ****999677788************************55666*********88879999999988889999********************86669***** PP

      GRAS 191 leeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhns.esFlerflealeyysalfdsleaklpreseerikvEr 287
                + ++ ++ +E+l+++ +++lh+l+   +s ++er+e+L+++k+l+Pk vv++e++  +++ns ++F++ f++ +ey + ++ds+++ +    + r + Er
  OIS96574 376 SQVIKSSSdDETLVICAQFRLHNLH---HSNPDERTELLRILKNLEPKGVVLSENNieCSCNScGDFATSFSRRVEYLWRFLDSTSVAY----KGRESEER 469
               ****99888***************9...77777889*******************93355555269*******************9885....77777788 PP

      GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
               ++++ e+ +++++ g++    +e++ekW er++++GF + +++e+a + a++llrk++ ++++rvee++g++ l Wk++p+ ++S W+
  OIS96574 470 RMMEGEAAKALTNVGEM----NERKEKWCERMRSVGFVKEAFGEDAIDGARALLRKYDsNWEMRVEERDGCVDLWWKGQPISFCSLWK 553
               88888899999999999....88888********************************9999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    
MIKHQNSLSY HPSSWFFDTM TIDVPEPNSN SDPISDWLDT LSDVPSFLDE PFNYPEDLNF  60
YGDSWWIPPN QDKHIVNHDI IDNDICTSFD YSSPVNTATS TIPPEPIILD HPQPLDLSKK  120
RKTSGSDHNP KVSRKNQNRQ MNEADEIKKS TGHKRVTNKS TTNNGNNKEG RWAEHLLNPC  180
AAAITVGNMN RVQHLLYVLH ELASFTCDAN HRLAAHGLHA LTHHLSSPGS SSSSVGVTNF  240
ATYANHKFFR DSLINFNDIN PWFRIPNKIA NLSVLQIIGE QDKLKKLHIL DIGVSHGVQW  300
PTLLEELTRR SGGPPPLVRL TVITPTTENG EFRGTPFVIG PAGYNFSSQL LAFAKAININ  360
LQINRLDNFP LQNLNSQVIK SSSDDETLVI CAQFRLHNLH HSNPDERTEL LRILKNLEPK  420
GVVLSENNIE CSCNSCGDFA TSFSRRVEYL WRFLDSTSVA YKGRESEERR MMEGEAAKAL  480
TNVGEMNERK EKWCERMRSV GFVKEAFGED AIDGARALLR KYDSNWEMRV EERDGCVDLW  540
WKGQPISFCS LWKIDSQCK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1282287DKLKKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-126GRAS family protein