PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIS96588
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 839aa    MW: 92064.9 Da    PI: 6.1509
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIS96588genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.5e-182583357
              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
  Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
              k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  OIS96588 25 KYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 83
              56789****************************************************97 PP
2START156.91.6e-491643712205
               HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT.EEEEEEEEXXTTX CS
     START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg.galqlmvaelqal 101
               +aee+++e+++ka+ ++  Wv ++ +++g++++ +f+ s+++sg a+ra+g+v  +++   +e+l+d++ W ++++ +e+    s g g+++l +++ +a+
  OIS96588 164 IAEETLAEFLSKATGTAVDWVPMPGMKPGPDSVGIFAISHSCSGVAARACGLVSLEPT-KIAEILKDRPSWFRDCRNVEVFTMFSAGnGTIELLYTQIYAP 263
               7899******************************************************.7777777777******************************** PP

               X-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHH CS
     START 102 splvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwva 198
               ++l+p Rdf+++Ry+ +l+ g++v++++S++ +   p+    s++vRa++lpSg+li+p+++g+s +++v+h +l++++ +++lr+l++s+ + ++k++ a
  OIS96588 264 TTLAPaRDFWTLRYTTTLENGSFVVCERSLSGTGAGPNaasASQFVRAQMLPSGYLIRPCDGGGSIIHIVDHLNLEAWSAPEILRPLYESSKVVAQKMTIA 364
               **********************************999999999********************************************************** PP

               HTXXXXX CS
     START 199 tlqrqce 205
               +l++ ++
  OIS96588 365 ALRYARQ 371
               **99875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    
MAMVAQQHRE SSSGSITKHL DSSGKYVRYT AEQVEALERV YAECPKPSSL RRQQLIRECP  60
ILSNIEPKQI KVWFQNRRCR EKQRKESSRL QTVNRKLSAM NKLLMEENDR LQKQVSQLVC  120
ENGFMRQQLH TASTATTDVS CESVVTTPQH SLRDANNPAG LLSIAEETLA EFLSKATGTA  180
VDWVPMPGMK PGPDSVGIFA ISHSCSGVAA RACGLVSLEP TKIAEILKDR PSWFRDCRNV  240
EVFTMFSAGN GTIELLYTQI YAPTTLAPAR DFWTLRYTTT LENGSFVVCE RSLSGTGAGP  300
NAASASQFVR AQMLPSGYLI RPCDGGGSII HIVDHLNLEA WSAPEILRPL YESSKVVAQK  360
MTIAALRYAR QIAQETSGEV VYGLGRQPAV LRTFSQRLSR GFNDAINGFS DDGWSLLSSD  420
GGEDVIVAVN SRKNIATTSI PLSPLGGILC AKASMLLQNV PPAVLVRFLR EHRSEWADFN  480
VDAYVASSMK SCSYAYPGMR PTRFTGSQII MPLGHTIEHE EMLEVIRLEG HSIGQEDAFM  540
PRDIHLLQMC SGTDENAVGA CSELVFAAID EMFPDDAPLL PSGFRIIPLE SKSSDPQDTS  600
NAHRTLDLAS SLEVGPATNP ATGDVVSGYS ARSVLTIAFQ FPFEDNLQDN VATMARQYVC  660
SVVSSVQRVA MAISPTGVNS TFGSKLSPGS PEAVTLSHWI CQSYSYHMGT ELLQAASRGD  720
ESVLKNLWQH QDAILCCSLK SLPVFIFANK AGLDMLETTL VALQDITLDK IFDESGRKVL  780
FAEFPKIMEQ GFAYLPGGIC MSAMGRHISY EQAIAWKVFA SEETSVHCLA FSFINWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein