PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS96627

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 650aa MW: 69787 Da PI: 6.4571

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS96627	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51.5	1.8e-16	450	496	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRdriN+++ L++l+P++ K++Ka++L +A+eY+k Lq OIS96627 450 VHNQSERRRRDRINEKMRALQDLIPNC-----NKVDKASMLDEAIEYLKTLQ 496 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 650 aa Download sequence
MPLSEFLKMA RGKLESGQEK RSSTTDPSSS LEDELVELVW ENGQIVMQSQ SSRAKKNPTF 60 NNLPSSSLRV KDKFTGNSST TKIGKFGAMD SMLDNMPLTV PNDEMDLIEE DEVVPWLSYS 120 ADDSPQQDYH SPLLPQISGL TVNEPSGRRG FASMDKRGIS NQMNGDSHSV PIRNIVNSEQ 180 GNASKLSPSR FNLLCSGAPK KSSAPILPLG SRVSDIISSN TSCNMPVSAF GYSNSSQASA 240 GVIKSMKMQK QNIPGNSSSL LNFAHFSRPI TGGSAVSGSS TIGARGNIER ENGGSNRNRV 300 SEVPFESYFS SEKENDVHSP PYMASSKVES KGSIGLHERS CPIEQSDNLC GDSPSNNDMS 360 RDQFTGVNAL KEFPDGERNV EPVVVCSSVF SGSSAERASS DHPRTLKRKT RDNEESEFQS 420 EDVEEESVGI KSADPAQGGA GSKRSRAAEV HNQSERRRRD RINEKMRALQ DLIPNCNKVD 480 KASMLDEAIE YLKTLQVQVQ MMSMGAGLCA PPMMFPAGMQ YMHATNVPQF SPMGLGMGMG 540 FGMGTLEMNG GSPGCSIYPI PTMQGAHLRS PPVSGSATFP GVAGSNLHSF RHPGQGLPVS 600 VPPASLVPLA GQPSKNAAVG LNITTAGVHT DIRNTSTLDP ETKDALRTHI

Sequence ? help Back to Top

Protein Sequence Length: 650 aa Download sequence

MPLSEFLKMA RGKLESGQEK RSSTTDPSSS LEDELVELVW ENGQIVMQSQ SSRAKKNPTF  60
NNLPSSSLRV KDKFTGNSST TKIGKFGAMD SMLDNMPLTV PNDEMDLIEE DEVVPWLSYS  120
ADDSPQQDYH SPLLPQISGL TVNEPSGRRG FASMDKRGIS NQMNGDSHSV PIRNIVNSEQ  180
GNASKLSPSR FNLLCSGAPK KSSAPILPLG SRVSDIISSN TSCNMPVSAF GYSNSSQASA  240
GVIKSMKMQK QNIPGNSSSL LNFAHFSRPI TGGSAVSGSS TIGARGNIER ENGGSNRNRV  300
SEVPFESYFS SEKENDVHSP PYMASSKVES KGSIGLHERS CPIEQSDNLC GDSPSNNDMS  360
RDQFTGVNAL KEFPDGERNV EPVVVCSSVF SGSSAERASS DHPRTLKRKT RDNEESEFQS  420
EDVEEESVGI KSADPAQGGA GSKRSRAAEV HNQSERRRRD RINEKMRALQ DLIPNCNKVD  480
KASMLDEAIE YLKTLQVQVQ MMSMGAGLCA PPMMFPAGMQ YMHATNVPQF SPMGLGMGMG  540
FGMGTLEMNG GSPGCSIYPI PTMQGAHLRS PPVSGSATFP GVAGSNLHSF RHPGQGLPVS  600
VPPASLVPLA GQPSKNAAVG LNITTAGVHT DIRNTSTLDP ETKDALRTHI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	455	460	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	9e-39	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIS96627