PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS96651

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 172aa MW: 19101.6 Da PI: 10.4779

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS96651	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00075	46	68	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F ++ L H++ H OIS96651 46 FSCNFCKRKFYSSQALGGHQNAH 68 89******************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence
MISAVDSNQG TSVLDQGEWL NLSLGRNLPS TSKESESHLP TSAKVFSCNF CKRKFYSSQA 60 LGGHQNAHKR ERGAVRQYQS QRMMTMMTLP INNPMFRSLG MIPHSLVHKS GRDASATVAT 120 FSEAGAGFQM TPHTNQMKGS FDLKWPGSFQ LNQQQSKDHA SNLNKLDLNL KL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24625.1	4e-19	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIS96651