PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS96677

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 258aa MW: 29520.6 Da PI: 8.7576

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS96677	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.7	5.5e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll ++v+++G g W++++ + g++R++k+c++rw++yl OIS96677 14 KGAWTEEEDLLLRRCVEMYGEGKWHKVPIRAGLNRCRKSCRLRWLNYL 61 79********************************************97 PP
2	Myb_DNA-binding	49.8	7.8e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++ +E +l+++++k+lG++ W++Ia +++ gRt++++k++w+++l OIS96677 67 RGDFSSDEIDLILRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTHL 112 899*****************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence
MNTTTITKSS GVRKGAWTEE EDLLLRRCVE MYGEGKWHKV PIRAGLNRCR KSCRLRWLNY 60 LRPHIKRGDF SSDEIDLILR LHKLLGNRWS LIAGRLPGRT ANDVKNYWNT HLQRKLIHPQ 120 RQDRKCRSLK ITENTIVRPR PRTFSSAKNV SLCSNKSITK TIHKEDGSKE NNICEKPIGD 180 APTDGGIQWW TSLLDNCNEI EEAAAVGSIN LEENNKLLSL LHEEISPPIN GVSNCMQEGQ 240 SGNWDDLSVD IDLWDLLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	1e-67	MYB family protein

Link Out ? help Back to Top
Ensembl	OIS96677