PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS96730

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

YABBY

Protein Properties

Length: 187aa MW: 21113 Da PI: 8.659

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS96730	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	220.6	4.6e-68	6	167	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsen 104 + +se++Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a + +++s + +++ +l+v + + ++ + s+++ ++ +++ + OIS96730 6 DVASEKLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFHSSSSSSSSWQ----DIH-QLQVPNYTAPEYRMDFGSSTKCNNRMTMRTP 101 5689*****************************************999999888886333....332.3344444444444444444444444455555 PP YABBY 105 edeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++++ + v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl OIS96730 102 ITNNTHEERIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 167 55555555569***************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence
MASCIDVASE KLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAAFHSSS 60 SSSSSWQDIH QLQVPNYTAP EYRMDFGSST KCNNRMTMRT PITNNTHEER IVNRPPEKRQ 120 RVPSAYNQFI KEEIQRIKAN NPDISHREAF STAAKNWAHF PHIHFGLMLE SNNQAKLSCG 180 SRKLSKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.1	3e-86	YABBY family protein

Link Out ? help Back to Top
Ensembl	OIS96730