PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIS96776
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 212aa    MW: 24984.3 Da    PI: 9.6394
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIS96776genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.67.9e-19351551
              SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE..EEEEE- CS
    SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk..lyeyss 51
              n+ +r+v +  R ++++KKAeELSvLCd+e+ +i+fs++ k  +ye++s
  OIS96776  3 NEHRRSVVLQERMETLFKKAEELSVLCDVEIGIIVFSPDKKnvVYEWPS 51
              889**********************************986544999986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
MVNEHRRSVV LQERMETLFK KAEELSVLCD VEIGIIVFSP DKKNVVYEWP SRDKFKQLLM  60
RYLDKPLVER LKKLTTNEMF LMKEMDAKMK KIEQQKTEEK EMEQLFSQLY LGEKTVFDLD  120
KRQLIGVRNL AIKAEEKAVK RRIQLKLQDQ RLSSPIDRIQ LRVAPLNVQD QRLQLPVEDP  180
LALRLAPLNV QDQRLQLPVD DPLALRLAPP EN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26650.12e-11M-type_MADS family protein