PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS96802

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 345aa MW: 38435.1 Da PI: 5.7407

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS96802	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.6	6.1e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++q+G+g+W+++++ g+ R+ k+c++rw +yl OIS96802 14 KGPWTPEEDIILVSYIQQHGPGNWRAVPSNTGLLRCSKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	49.5	1e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l OIS96802 67 RGNFTEHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ QHGPGNWRAV PSNTGLLRCS KSCRLRWTNY 60 LRPGIKRGNF TEHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLRKKLKKLQ 120 GNDENSSQEG ISSSSQSNVS KGQWERRLQT DIHMAKKALC EALSLDKSDS PPNNPIPQPV 180 QSSCTYASSA ENISRLLQNW MKTSPKSSQF SQSNSECTTQ SSFNNLSIGQ GSSSSPSEGT 240 ISATTPERFD PIFMSQSMMA DECNAFTPEN AGTFQVESKP NLPNLNAEYG FLFQEESKPS 300 LESEVPLTLL EKWLFDDAIN APAQEDLMGL GMGMEMNLGD ATDLF

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ QHGPGNWRAV PSNTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TEHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLRKKLKKLQ  120
GNDENSSQEG ISSSSQSNVS KGQWERRLQT DIHMAKKALC EALSLDKSDS PPNNPIPQPV  180
QSSCTYASSA ENISRLLQNW MKTSPKSSQF SQSNSECTTQ SSFNNLSIGQ GSSSSPSEGT  240
ISATTPERFD PIFMSQSMMA DECNAFTPEN AGTFQVESKP NLPNLNAEYG FLFQEESKPS  300
LESEVPLTLL EKWLFDDAIN APAQEDLMGL GMGMEMNLGD ATDLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47600.1	1e-105	MYB family protein

Link Out ? help Back to Top
Ensembl	OIS96802