PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS96945

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 528aa MW: 58713.8 Da PI: 7.9835

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS96945	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.2	2.9e-16	59	105	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd+ l++av+ + g++Wk+Ia+ ++ R++ qc +rwqk+l OIS96945 59 KGGWTPEEDDTLKRAVAVFRGKCWKKIAEFFP-DRSEVQCLHRWQKVL 105 688***************************.**********986 PP
2	Myb_DNA-binding	57.3	3.5e-18	111	157	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++++++v+++G+ W+ Ia+ ++ gR +kqc++rw+++l OIS96945 111 KGPWTREEDDKIIELVAKYGPMKWSVIAKSLP-GRIGKQCRERWHNHL 157 79****************99******.***********97 PP
3	Myb_DNA-binding	57.2	3.8e-18	163	206	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT eE+ l+da++ +G++ W+ Ia+ ++ gRt++ +k++w++ OIS96945 163 KDAWTLEEERALIDAHRIHGNK-WAEIAKVLP-GRTDNAIKNHWNS 206 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 528 aa Download sequence
MAELKVEDCC TENKQSAAAS NSSVSENSAS VSLRSPTVSS PTPTSPTHRR TSGPIRRAKG 60 GWTPEEDDTL KRAVAVFRGK CWKKIAEFFP DRSEVQCLHR WQKVLNPDLV KGPWTREEDD 120 KIIELVAKYG PMKWSVIAKS LPGRIGKQCR ERWHNHLNPN IKKDAWTLEE ERALIDAHRI 180 HGNKWAEIAK VLPGRTDNAI KNHWNSSLRK KLDFYLATGN LPPATRDGLQ NGFKDTTETA 240 KAEESLVASS GTADMCKIEN GWQVTEISAS NGGPQTESTD SEVVRLEAQS PEIDAIRHIK 300 PITESETLYE ERRINSVVDR LKVVEAPFHC EIPTCGTLYY EPPTSESCIS LDSDLLNIRW 360 AQCESDASPS PSPNGFFTPP STKGGSLYAQ TPESVLKIAA RSFPNTPSIL RKRKTQAKLS 420 APTNKMGKSD GDFCKDKPTD ACEEILPRNS SNGIGLYNSQ AFNASPPYRL RSKRTSIFKS 480 LEKQLEFTLN NEKHDTSNEI SESTVNDISH AAKDCSQSAK KDTDKKVE

Sequence ? help Back to Top

Protein Sequence Length: 528 aa Download sequence

MAELKVEDCC TENKQSAAAS NSSVSENSAS VSLRSPTVSS PTPTSPTHRR TSGPIRRAKG  60
GWTPEEDDTL KRAVAVFRGK CWKKIAEFFP DRSEVQCLHR WQKVLNPDLV KGPWTREEDD  120
KIIELVAKYG PMKWSVIAKS LPGRIGKQCR ERWHNHLNPN IKKDAWTLEE ERALIDAHRI  180
HGNKWAEIAK VLPGRTDNAI KNHWNSSLRK KLDFYLATGN LPPATRDGLQ NGFKDTTETA  240
KAEESLVASS GTADMCKIEN GWQVTEISAS NGGPQTESTD SEVVRLEAQS PEIDAIRHIK  300
PITESETLYE ERRINSVVDR LKVVEAPFHC EIPTCGTLYY EPPTSESCIS LDSDLLNIRW  360
AQCESDASPS PSPNGFFTPP STKGGSLYAQ TPESVLKIAA RSFPNTPSIL RKRKTQAKLS  420
APTNKMGKSD GDFCKDKPTD ACEEILPRNS SNGIGLYNSQ AFNASPPYRL RSKRTSIFKS  480
LEKQLEFTLN NEKHDTSNEI SESTVNDISH AAKDCSQSAK KDTDKKVE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	411	437	RKRKTQAKLSAPTNKMGKSDGDFCKDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	1e-135	MYB family protein

Link Out ? help Back to Top
Ensembl	OIS96945