PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS96999

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 397aa MW: 43601.8 Da PI: 7.4317

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS96999	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	132	5.7e-41	81	245	2	123
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............. 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+++++tgt++++a+++ + s +ss+s+ s + OIS96999 81 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTsLNISLRSSGSSMSVPsqlrssyfspnfs 181 789******************************************************************99987777777777555556667778888888 PP TCP 89 .............................kaaksaakskksqksaasalnlakesrakararar 123 + + +++ + +q+ + l+l + s +++ +r+r OIS96999 182 lsqrrglfqgiglssdrsattflnfqtgnTNPSMNHQLQAKQEMRDNSLDLTETSIEESLSRKR 245 9999999999998766666666666665422222223333333333345555555555555533 PP

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence
MDGGGDDHFH HQHQHHHHHH QYRQNNFPFQ LLEKKEDEPC SSSSAAANNY PSLAISPSDH 60 TNTNPNNDNT LQITETSKKP PPKRTSTKDR HTKVDGRGRR IRMPALCAAR VFQLTRELGH 120 KSDGETIEWL LQQAEPSVIA ATGTGTIPAN FTSLNISLRS SGSSMSVPSQ LRSSYFSPNF 180 SLSQRRGLFQ GIGLSSDRSA TTFLNFQTGN TNPSMNHQLQ AKQEMRDNSL DLTETSIEES 240 LSRKRRQEVD LQQQHDQQQQ MGSYLLQSST GSMPASHSSI PANFWMLTNN NNQVLGGDPI 300 WTFPSVSNSA AALYRSTMSS GLHFMNFPAP MALLPTQQLG TSLVGNSSGT SLNEGQLGMV 360 TGLNPYRQCS GVSESQASGS HSHHGGADDR NDTTSHH

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence

MDGGGDDHFH HQHQHHHHHH QYRQNNFPFQ LLEKKEDEPC SSSSAAANNY PSLAISPSDH  60
TNTNPNNDNT LQITETSKKP PPKRTSTKDR HTKVDGRGRR IRMPALCAAR VFQLTRELGH  120
KSDGETIEWL LQQAEPSVIA ATGTGTIPAN FTSLNISLRS SGSSMSVPSQ LRSSYFSPNF  180
SLSQRRGLFQ GIGLSSDRSA TTFLNFQTGN TNPSMNHQLQ AKQEMRDNSL DLTETSIEES  240
LSRKRRQEVD LQQQHDQQQQ MGSYLLQSST GSMPASHSSI PANFWMLTNN NNQVLGGDPI  300
WTFPSVSNSA AALYRSTMSS GLHFMNFPAP MALLPTQQLG TSLVGNSSGT SLNEGQLGMV  360
TGLNPYRQCS GVSESQASGS HSHHGGADDR NDTTSHH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	242	247	SRKRRQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47620.1	2e-56	TCP family protein

Link Out ? help Back to Top
Ensembl	OIS96999