PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS97446

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GATA

Protein Properties

Length: 543aa MW: 60617 Da PI: 7.842

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS97446	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	49.4	6.2e-16	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ OIS97446 7 CYHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGT 41 **************66666*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence
MGKEGPCYHC GVTSTPLWRN GPPEKPILCN ACGSRWRTKG TLANYTPLHA RAEPCDFEEH 60 RVSRFKNMPM KNKEAKVLKR KQSHDMVEVG SPPDYNFGFR KCLDEDTSNR SSSGSVVSNS 120 ESCAQFGSAE ASDLTGPAQS NIWDTTVPSK KRTCFNRPKP SSVEKLTKDL YTILHEQQQS 180 SCFSASSEDD LLFESEKPMV SVEIGHGSML IRHPSSIGRE ESEASSLSVD NKHRSVNEAY 240 SRLTTRPVNI SKGVNSPNMG ADRTKKPIGQ AVEQDQIKRN KEKLETLQIL GHHNSPLRYI 300 ELKDVLNYEE FMRHLSSDEQ QQLLKYLPPV DSFAPPDSLR SMFESSQFEE NVASFQKLLA 360 EGVFDNSLPG VKLEDCRTLK RFILCYLSKS KWVEQYNLLK DTKCKNSSSG SDVAGEQSVI 420 GTCHSVNVKR PREGQHLKYS GAKTTMKSPK SMVMKSIYEQ KELLNNDGSY SSPKSSFALP 480 SETSSLVLDS FRSANENSDQ DLLLDVPSNS YFPQAELLLP TSSFTPQAST SSSSMYPSHL 540 VRP

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence

MGKEGPCYHC GVTSTPLWRN GPPEKPILCN ACGSRWRTKG TLANYTPLHA RAEPCDFEEH  60
RVSRFKNMPM KNKEAKVLKR KQSHDMVEVG SPPDYNFGFR KCLDEDTSNR SSSGSVVSNS  120
ESCAQFGSAE ASDLTGPAQS NIWDTTVPSK KRTCFNRPKP SSVEKLTKDL YTILHEQQQS  180
SCFSASSEDD LLFESEKPMV SVEIGHGSML IRHPSSIGRE ESEASSLSVD NKHRSVNEAY  240
SRLTTRPVNI SKGVNSPNMG ADRTKKPIGQ AVEQDQIKRN KEKLETLQIL GHHNSPLRYI  300
ELKDVLNYEE FMRHLSSDEQ QQLLKYLPPV DSFAPPDSLR SMFESSQFEE NVASFQKLLA  360
EGVFDNSLPG VKLEDCRTLK RFILCYLSKS KWVEQYNLLK DTKCKNSSSG SDVAGEQSVI  420
GTCHSVNVKR PREGQHLKYS GAKTTMKSPK SMVMKSIYEQ KELLNNDGSY SSPKSSFALP  480
SETSSLVLDS FRSANENSDQ DLLLDVPSNS YFPQAELLLP TSSFTPQAST SSSSMYPSHL  540
VRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-145	GATA family protein

Link Out ? help Back to Top
Ensembl	OIS97446