PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS97454

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 381aa MW: 42771.5 Da PI: 9.5882

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS97454	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	61.7	1.7e-19	32	123	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 +Wt++e+laLi+a+re++ +lrrg l+ ++W++v++++ + +++ qC++k+e+l++ry+++k+++ t + s++ +fd+++a OIS97454 32 CWTQDETLALIDAYRERWYALRRGYLRTADWDAVAAAVtsrcPDASPAKTSAQCRHKMEKLRQRYRAEKQRSLASpTGRFFSSWFFFDNMDA 123 8**********************************977776667788999*************9988776889999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence
MSSKLDVTVA ETSPPAVEEK PPPPARRFPP PCWTQDETLA LIDAYRERWY ALRRGYLRTA 60 DWDAVAAAVT SRCPDASPAK TSAQCRHKME KLRQRYRAEK QRSLASPTGR FFSSWFFFDN 120 MDAMENGTTV ASIKLNQQMA EKQVPSIDPN LLKLKINQKN GVNFIEDWTP TIMLNHGVAK 180 TPERNNFSSK IPNGYCFNKE EMPNEVEFGS GFRVKNGISI KSKRSVMNST SFDCDEGSEY 240 NGSNASDGFH VRNFGENFGI SSSRRNYGGN VEPNVDSRFG TPKLGKKGVG GGGGGGGVKR 300 GRDPMEEMVL SIRLLGEGFM KVEKMKMEMA KEVEQMRMEM EMKRNEMILQ SQKQIVDAFV 360 KVLNEVNNKN KNVKTVSPDE S

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence

MSSKLDVTVA ETSPPAVEEK PPPPARRFPP PCWTQDETLA LIDAYRERWY ALRRGYLRTA  60
DWDAVAAAVT SRCPDASPAK TSAQCRHKME KLRQRYRAEK QRSLASPTGR FFSSWFFFDN  120
MDAMENGTTV ASIKLNQQMA EKQVPSIDPN LLKLKINQKN GVNFIEDWTP TIMLNHGVAK  180
TPERNNFSSK IPNGYCFNKE EMPNEVEFGS GFRVKNGISI KSKRSVMNST SFDCDEGSEY  240
NGSNASDGFH VRNFGENFGI SSSRRNYGGN VEPNVDSRFG TPKLGKKGVG GGGGGGGVKR  300
GRDPMEEMVL SIRLLGEGFM KVEKMKMEMA KEVEQMRMEM EMKRNEMILQ SQKQIVDAFV  360
KVLNEVNNKN KNVKTVSPDE S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	1e-30	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OIS97454