PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS97509

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 314aa MW: 36137.8 Da PI: 8.8022

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS97509	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.9	1.1e-13	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+ Ed+ll d++k++G W++ + + g+ R++k+c++rw +yl OIS97509 14 KGTWTAKEDKLLTDYIKEHGEVGWRSLPIKAGLLRCGKSCRLRWVNYL 61 799***************99******99**********97 PP
2	Myb_DNA-binding	54.9	2e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++l++++ ++lG++ W++Ia +++ gRt++++k++w+++l OIS97509 67 RGNFTPEEEDLIIRLYNLLGSR-WSLIAGRIP-GRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence
MGRKPCCSKE GLRKGTWTAK EDKLLTDYIK EHGEVGWRSL PIKAGLLRCG KSCRLRWVNY 60 LKPGIKRGNF TPEEEDLIIR LYNLLGSRWS LIAGRIPGRT DNDIKNYWNT HLLKKLKSQG 120 LEPKRHKSLA KHMRRPKHKA NVSSQNNQKS NKEKKKRKKQ VKIEKNCNII EDKEQVAKKT 180 ENQWHTQDFA QKISANNHDI TCSSSSNTAT LQDGISSRAA STSEVVNCNN VHCSSSGQNV 240 EENDNEIYEK LQVIDELLLN DNCLPPTECT EFNSESQMLL MENVYEEYFQ LVSENSYHFQ 300 DYAHSFVGFS QDDL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	155	159	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	6e-63	MYB family protein

Link Out ? help Back to Top
Ensembl	OIS97509