PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS97771

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 625aa MW: 71418.3 Da PI: 8.871

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS97771	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.9	5.7e-14	8	53	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l OIS97771 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78***************************.**********986 PP
2	Myb_DNA-binding	33.6	9.4e-11	60	103	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l OIS97771 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68***************99.****8..********9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 625 aa Download sequence
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYDPNDDPR 120 KLKPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDARQR KRKRRGIDYN AEIPFEKKPP PGFYDVAEED RPVEQPKFPT 240 TIEELEGERR VDKEARLRKQ DIARNKIAER QDAPTAILHA NKLNDPEAVR KRSKLNLPAP 300 QIPDHELEAI AKIGIASDLL GGDELSEGNA ATRALLANYA QTPQHAMTPM RTPQRTPSTK 360 QDAIMMEAEN QRRLTQSQTP LLGGDNPMLH PSDFSGVTPK KREVQTPNPL LTPSATPGAT 420 GLTPRIGMTP SRDSYGMTPK GTPMRDELRI NEEMDMHNNA KLGQFNSKKE LLSGLKSLPQ 480 PKNEYQIVVQ QPHEENEEPP EEKIEEDMSD RIAREKAEEE ARQQALLRKR SKVLQRELPR 540 PPIASLELIR SSLMRADEDK SSFVPPTLIE QADEMIRKEL LSLLEHDNSK YPLDEKAEKE 600 KKKGVKRKVL AEPAIEDFEE DELKE

Sequence ? help Back to Top

Protein Sequence Length: 625 aa Download sequence

MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYDPNDDPR  120
KLKPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDARQR KRKRRGIDYN AEIPFEKKPP PGFYDVAEED RPVEQPKFPT  240
TIEELEGERR VDKEARLRKQ DIARNKIAER QDAPTAILHA NKLNDPEAVR KRSKLNLPAP  300
QIPDHELEAI AKIGIASDLL GGDELSEGNA ATRALLANYA QTPQHAMTPM RTPQRTPSTK  360
QDAIMMEAEN QRRLTQSQTP LLGGDNPMLH PSDFSGVTPK KREVQTPNPL LTPSATPGAT  420
GLTPRIGMTP SRDSYGMTPK GTPMRDELRI NEEMDMHNNA KLGQFNSKKE LLSGLKSLPQ  480
PKNEYQIVVQ QPHEENEEPP EEKIEEDMSD RIAREKAEEE ARQQALLRKR SKVLQRELPR  540
PPIASLELIR SSLMRADEDK SSFVPPTLIE QADEMIRKEL LSLLEHDNSK YPLDEKAEKE  600
KKKGVKRKVL AEPAIEDFEE DELKE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	205	KRRELKAAGIDARQRKRKRR
2	199	205	QRKRKRR
3	200	205	RKRKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	0.0	MYB family protein

Link Out ? help Back to Top
Ensembl	OIS97771