PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIS97885
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 241aa    MW: 27907.5 Da    PI: 5.8666
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIS97885genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.14.1e-131461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +l + +   G  +W+++++  g+ R++k+c++rw +yl
         OIS97885 14 RGPWTIEEDHKLMNFILNNGIQCWRLVPKLAGLMRCGKSCRLRWINYL 61
                     89********************************************97 PP
2Myb_DNA-binding52.51.1e-1667110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ ++ E++ +++++ qlG++ W++Ia++++ gRt++++k++w++
         OIS97885  67 RGALSEAEEDMIIKLHSQLGNR-WSKIAAHFP-GRTDNEIKNHWNT 110
                      78889*****************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    
MGRQPCCEKI GLKRGPWTIE EDHKLMNFIL NNGIQCWRLV PKLAGLMRCG KSCRLRWINY  60
LRPDLKRGAL SEAEEDMIIK LHSQLGNRWS KIAAHFPGRT DNEIKNHWNT RIKKKLKLLG  120
LDPLTHKPIE QPDHHKNDDI KQNDSSEKEE INGKLELPET LPSVDFPQEQ KNIQNSTSSS  180
SLDEMNESNL EMGSNELFQN SDTLETFSSD MYNPGLEDPF QNWIGSPIHW NLFDNLDDNF  240
L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.15e-80MYB family protein