PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIS97925
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 245aa    MW: 27443.3 Da    PI: 6.7013
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIS97925genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260927e-294106198
    DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
               +C++C+vlr++C+++C l+p++     p++q++++ +++k++G++ + +l+++ p++ r+++++sl+yeA+ r+ +Pv+G+vg++ ++++  +q+++e +l
  OIS97925   4 SCNGCRVLRKGCSENCSLRPCLqwirsPDSQANATVFLAKFYGRAGLFNLINSGPDHLRPAIFRSLLYEACGRIINPVHGSVGLMCSGNWTRCQEAVESVL 104
               6**********************************************************************************************999887 PP

    DUF260  97 lk 98 
                +
  OIS97925 105 KG 106
               65 PP
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    
MRMSCNGCRV LRKGCSENCS LRPCLQWIRS PDSQANATVF LAKFYGRAGL FNLINSGPDH  60
LRPAIFRSLL YEACGRIINP VHGSVGLMCS GNWTRCQEAV ESVLKGSTIM QIPIIDDNNT  120
DQESHQIMPL KGCDIRHISK NNSTDIHQVV KTRNRFKRKA KVETNASEYM INEPGPLKFS  180
ITGWDFDHHM EEEDELKRAP SHDSFSVETV EPSLVNRFEP VLPVKLEEDG GDVGLELTLG  240
LMSPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.14e-73LBD family protein