PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIS98062
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 747aa    MW: 85025.7 Da    PI: 5.8675
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIS98062genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3764.6e-1153747441373
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
               l++lL++cA+av+++d + a++lL++++ ++sp gd +qRla++f+ +++arla+++s++ykal  ++ts    ++ l+a++l+   sP+ k+s ++ N++
  OIS98062 374 LRTLLINCAQAVAADDCRSATELLKQIRLHSSPFGDGNQRLAHCFADGMEARLAGTGSQIYKALVNKKTS---AADFLKAYHLYLASSPFRKLSVFASNKT 471
               6789************************************************************999999...9*************************** PP

      GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
               I+  + ++ rvH+iDf+i +G+QWp+L+q +a+R++gpp+lRiTg++ p++g   +e++eetg+rL+++A++++vpfe+++ +ak++e+++le+L+++++E
  OIS98062 472 IMTKAGNAARVHVIDFGILYGFQWPTLIQRIAAREGGPPKLRITGIEFPQPGfrPAERIEETGRRLSDYAQTFNVPFEYHA-IAKKWETIRLEDLKLEKDE 571
               ***************************************************9*****************************.7****************** PP

      GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
                l+Vn+ ++ ++l+de+v ++s r+ vL+l+++++P+++++   +  ++++ F++rf e l ++salfd+lea++pres er+ +Ere++gre+ nv+ace
  OIS98062 572 FLVVNCLYRFKNLPDETVLTDSSRTLVLDLIREINPDIFIHGIVNGAYSAPFFVTRFREVLFHFSALFDMLEANVPRESPERMLIEREIFGREALNVIACE 672
               ***************************************************************************************************** PP

      GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
               g er+er et+++W+ r  +a F+++p++ ++++ a   +   + + + ++e++++l+lgWk+r+++++S+W
  OIS98062 673 GWERVERPETYKQWQVRNLRARFTQIPFEREVMNRAIEKVTSSYHKDFVIDENNKWLLLGWKGRTIYALSCW 744
               ************************************99999999888************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 747 aa     Download sequence    
MDPRFNSFPT SGFSLENQSL PISSNRWKNN VPRFEAIYQD QKLVNGSRFE NNFVPNNVSG  60
VQSLSNVPLP TSNIALTSDI GTEDEYNEDF DFSDTVLSYI NQMLMEEDME DKTHMLQESL  120
EFQAKEKSFY EALGKKYPPS PQQNLLITYQ NGEIPDEYCS GSLYNFASNS NDSSGDLIDQ  180
TVNGTYSSIS SSSSLNNIVD GFLDSPVSPL HNPDIYNDSY PIWNFRKGVE EANKFLPTNI  240
KLLDNVDIND LLLLEKRGES GYAAARVEKR YEGETSPTEP RGRKNPHRDD KDLLEEERSS  300
KQAAVYTEST VRSDEFDIVL LHSLGNGKEA LEAYRESLKN ARMKTTVQNG QSKGYNGGKG  360
RSKKHSGKKE IVDLRTLLIN CAQAVAADDC RSATELLKQI RLHSSPFGDG NQRLAHCFAD  420
GMEARLAGTG SQIYKALVNK KTSAADFLKA YHLYLASSPF RKLSVFASNK TIMTKAGNAA  480
RVHVIDFGIL YGFQWPTLIQ RIAAREGGPP KLRITGIEFP QPGFRPAERI EETGRRLSDY  540
AQTFNVPFEY HAIAKKWETI RLEDLKLEKD EFLVVNCLYR FKNLPDETVL TDSSRTLVLD  600
LIREINPDIF IHGIVNGAYS APFFVTRFRE VLFHFSALFD MLEANVPRES PERMLIEREI  660
FGREALNVIA CEGWERVERP ETYKQWQVRN LRARFTQIPF EREVMNRAIE KVTSSYHKDF  720
VIDENNKWLL LGWKGRTIYA LSCWIPI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein