PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS98356

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

DBB

Protein Properties

Length: 235aa MW: 26132.5 Da PI: 4.5949

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS98356	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.4	4.4e-06	4	43	5	38
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ +e+ +++ C ++ lC++C e H H+ OIS98356 4 QCDVCEKAQATVICCADEAALCAQCDIEVHAAnklaskHQ 43 7****99*******************6566666665 PP
2	zf-B_box	28.8	2.5e-09	53	95	2	38
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 + + C+ +++k + +fC +++ l+C+dC +++H+ H+ OIS98356 53 KLPPCDICQDKAAFIFCVEDRALFCKDCDEAIHSAsslaanHQ 95 6789*****************************6566666665 PP

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence
MKIQCDVCEK AQATVICCAD EAALCAQCDI EVHAANKLAS KHQRLHLQCL SNKLPPCDIC 60 QDKAAFIFCV EDRALFCKDC DEAIHSASSL AANHQRFLAT GIRVALSSSC NKDAVKTQLE 120 PPQPPQQNSQ QVSLKMPPHQ LSGITSPSWP VDDFLGFPDY DSTDKKELLE LGELEWLGDI 180 DLFGEQTAAE VPELSVSQSS NTHNIYKQTR YQMSYKKPRI EIPDDDEYFT VPDLG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06040.1	5e-82	DBB family protein

Link Out ? help Back to Top
Ensembl	OIS98356