PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS98372

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 321aa MW: 35466.2 Da PI: 9.9744

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS98372	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	52.6	1.2e-16	36	120	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v +L+ea++ ++ +r+klk+++We+v+k++ +++ ++++qCk+k+e+++kry+ + +++ + s++p++ +l+ OIS98372 36 EWSEGAVSCLLEAYEAKWILRNRAKLKGHDWEDVAKHVsargNSTKSPKTQTQCKNKIESMKKRYRSESATAADA-----SSWPLYPRLD 120 5***********************************54444445567788**************99984.....57**9996 PP

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence
MDQEISNKDD FFPRNKQQNY HVATGNNTSD RLKRDEWSEG AVSCLLEAYE AKWILRNRAK 60 LKGHDWEDVA KHVSARGNST KSPKTQTQCK NKIESMKKRY RSESATAADA SSWPLYPRLD 120 LLLRGNNASA ASSSVIPPPP AVVEPPQPAI VLPPPPPAPV PLPPPPPLPT AVPIGNGGQN 180 SNGSNGFDRA AKEDIMDAKL SDNAAISEKN AMDTNSSTPA LYSDDKSKSK NVKLRSMEKK 240 SKKKRKRAEG WEIGESIRLL AEVVVRSEQA RMETMREIER MRAEAEAKRG EMDLKRTEII 300 ANTQLEIAKL FASITKGSVD P

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	239	247	KKSKKKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	1e-55	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OIS98372