PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS98928

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 451aa MW: 50882.6 Da PI: 5.9756

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS98928	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	70	4.5e-22	126	222	1	85
trihelix 1 rWtkqevlaLiearremeerlr.rgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +Wt++ v++Li+++ ++++ + +g +kk++W+ vs+ m++ g+++sp+qC++k+++lnkrykk++++ +++ ++ ++++ ++ d++ OIS98928 126 KWTDNVVRLLIQVVACVGDDGSlEGTeglkrksgciQKKGKWKTVSRIMMSNGCHVSPQQCEDKFNDLNKRYKKLNDILGRGtSCAVVENPALMDSM 222 7************777777632224555667889********************************************568999988888877 PP

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence
MNSSGMSGGF LSGYNGGFLG MNRLQQPQLN SNNAAHGHQT NHNNVQSSMS TKLGLENDKP 60 IGLMDVKSCM PFGKDKAVGP SNVVNNSNNH NNNTSDEDEP SFAEDGNGDN SGGALGKKGS 120 PWQRMKWTDN VVRLLIQVVA CVGDDGSLEG TEGLKRKSGC IQKKGKWKTV SRIMMSNGCH 180 VSPQQCEDKF NDLNKRYKKL NDILGRGTSC AVVENPALMD SMPQLSAKAK DTVKKILNSK 240 HLFYREMCAY HNGQKIPDCN DLEFPVHSSP VAAQCAKDNN GSQGDEAEEN DESDDDDESD 300 DEEDNHGVDE RMRRVEENGN FLPRTSGNDN FVAEINEFFQ DPTKSKWEQK MWIKKRMRQL 360 EEEKIGIQAE ALELEKRQFK WQRFCRKKDR ELEIERLENE KLILENEHMS LQLKHKELEI 420 DSKKPNISFN SAPLSIDRLR GRDQIDAARY H

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence

MNSSGMSGGF LSGYNGGFLG MNRLQQPQLN SNNAAHGHQT NHNNVQSSMS TKLGLENDKP  60
IGLMDVKSCM PFGKDKAVGP SNVVNNSNNH NNNTSDEDEP SFAEDGNGDN SGGALGKKGS  120
PWQRMKWTDN VVRLLIQVVA CVGDDGSLEG TEGLKRKSGC IQKKGKWKTV SRIMMSNGCH  180
VSPQQCEDKF NDLNKRYKKL NDILGRGTSC AVVENPALMD SMPQLSAKAK DTVKKILNSK  240
HLFYREMCAY HNGQKIPDCN DLEFPVHSSP VAAQCAKDNN GSQGDEAEEN DESDDDDESD  300
DEEDNHGVDE RMRRVEENGN FLPRTSGNDN FVAEINEFFQ DPTKSKWEQK MWIKKRMRQL  360
EEEKIGIQAE ALELEKRQFK WQRFCRKKDR ELEIERLENE KLILENEHMS LQLKHKELEI  420
DSKKPNISFN SAPLSIDRLR GRDQIDAARY H

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76870.1	2e-72	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OIS98928