PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIS99085
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YA
Protein Properties Length: 302aa    MW: 33124.2 Da    PI: 7.1355
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIS99085genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA94.61.2e-29168224158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                +ep+YVNaKQy+rIl+RRq+Rak+e ekk  +k+rkpylheSRh+hAlrR+R+sgGrF
   OIS99085 168 QEPVYVNAKQYRRILQRRQSRAKAELEKKQ-IKARKPYLHESRHQHALRRARASGGRF 224
                69************************9999.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    
MPSNTKSANR EEPNAYNGPR SAVYSEPWWN SAGYNPVSPG LMRGTASDSS SLEQSMDGQS  60
QSDGGINEED DDAPEKSQSI VPLHADGSYG QADQNFQPAA PTIPPKLDGT LTQTQQLELV  120
GHSIACAPNP YVDPYYGGMM TAFGQPLVPP HVLDMHYARM PLPHEMAQEP VYVNAKQYRR  180
ILQRRQSRAK AELEKKQIKA RKPYLHESRH QHALRRARAS GGRFAKKTDA DASKGTGYVS  240
SSGSEPLQFN AADVQNRHVN GRLAEHQHSY SNGSSYGNQS SFQESKDEYQ SAESREGGSS  300
GK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.16e-59NF-YA family protein