PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIS99141
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 821aa    MW: 89228.2 Da    PI: 6.5108
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIS99141genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.72.7e-20127182156
               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
               ++k +++t++q++eLe++F++n++p++++r eL k+l L+ rqVk+WFqNrR+++k
  OIS99141 127 KKKYHRHTPYQIQELEAAFKENPHPDEKARLELGKRLTLESRQVKFWFQNRRTQMK 182
               79999************************************************999 PP
2START165.34.5e-523355591206
               HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT CS
     START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg 88 
               ela +a++el+k+a+ ++p+W++      e +  +e+ ++f++  +     +++ea +a+g v  ++  lve+l+d++ +W  ++     + +t++viss 
  OIS99141 335 ELAFAAMNELLKLAEIGDPLWFRNFdgsgEALSLEEYARSFPPCIGmkpsnFTTEATKATGTVMINSLALVETLMDTS-RWVDMFScivgRTSTIDVISSS 434
               57899******************9988888899999999999988899******************************.*********************9 PP

               ......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHH CS
     START  89 ......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllr 182
                     g lql++ae+q+ls lvp R + f+R+++q+ +g+w++vdvS+d  q+ ++  +   +++lpSg+++++++ng+skv+w+eh++++++++h+ +r
  OIS99141 435 asgsrnGNLQLIQAEFQVLSALVPvRQVKFLRFCKQHAEGVWAVVDVSIDAIQEGSQPREAGNCRRLPSGCIVQDLPNGYSKVIWIEHMEYDENTIHNFYR 535
               99*****************************************************998899999************************************* PP

               HHHHHHHHHHHHHHHHHTXXXXXX CS
     START 183 slvksglaegaktwvatlqrqcek 206
               ++++sg+ +ga++w atlqrqce+
  OIS99141 536 PFIRSGRGFGAQRWIATLQRQCEC 559
               **********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 821 aa     Download sequence    
MSFGGFIGSS SGGNSGGDGG SGVSRVVADS PYNNTMPTAA TIAHQSQQLV TSPLTQPMFN  60
SSPLSLALKP KMEGIGDMGL IGENFDAVAM GRSSREDEYE SRSGSDNLDG GASGDDQDTP  120
LGKSSRKKKY HRHTPYQIQE LEAAFKENPH PDEKARLELG KRLTLESRQV KFWFQNRRTQ  180
MKTQLERHEN AILKQENDKL RIENIAMKEA MRSPMCGHCG GQAILGEIHI EEHHLRIENA  240
RLRDELNRIC VLANKFLGRP LGSFPGTMPP GMANSGLELA VGRNGFGAMN SVDTALPMGL  300
DFGNGLSSPL TMMSPRPTPS MTSTDVSFDK SMLMELAFAA MNELLKLAEI GDPLWFRNFD  360
GSGEALSLEE YARSFPPCIG MKPSNFTTEA TKATGTVMIN SLALVETLMD TSRWVDMFSC  420
IVGRTSTIDV ISSSASGSRN GNLQLIQAEF QVLSALVPVR QVKFLRFCKQ HAEGVWAVVD  480
VSIDAIQEGS QPREAGNCRR LPSGCIVQDL PNGYSKVIWI EHMEYDENTI HNFYRPFIRS  540
GRGFGAQRWI ATLQRQCECL AVITSSAVPS GDGAVVSPSG RRSIAMLARR ITRNFCGGVC  600
ATFYKWEPIQ TGTAEDTKLM MRKSIGDPGE PPGIVLSATR TIWLPVTHQR LFDFLRNEQT  660
RSQWDVLSHG GPMHQIVHIA KGQDLGNSIS LFRANAAASD ANQNSMLILQ DSCTDVSGSI  720
VAYAAVDTAE MNVVMSGGDS SCVAFLPSGF AIVPDCFQNS NNGMLEKEDN GGSSNGSLLT  780
LGFQILVNSL PAAKLTMESV NTVNALISRT LQGIKTAFQC N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0HD-ZIP family protein