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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OIS99156 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | MYB | ||||||||
| Protein Properties | Length: 323aa MW: 36193.8 Da PI: 7.7665 | ||||||||
| Description | MYB family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 61 | 2.5e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg WT+eEd +l +++q+G+++W++I+++ g+ R++k+c++rw +yl
OIS99156 14 RGQWTPEEDHKLSSYIAQHGTRNWRLIPKHAGLQRCGKSCRLRWTNYL 61
89********************************************97 PP
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| 2 | Myb_DNA-binding | 46.1 | 1.1e-14 | 68 | 110 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
g +++ E++ +v ++ lG++ W+ Ia+ ++ gRt++++k++w++
OIS99156 68 GQFSEAEEQTIVTLHSVLGNR-WSVIAAQLP-GRTDNDVKNHWNT 110
789******************.*********.***********97 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 323 aa Download sequence |
MGRIPCCEKD NVKRGQWTPE EDHKLSSYIA QHGTRNWRLI PKHAGLQRCG KSCRLRWTNY 60 LRPDLKHGQF SEAEEQTIVT LHSVLGNRWS VIAAQLPGRT DNDVKNHWNT KLKKKLSGMG 120 IDPVTHKPFS HLISEIANTL SPPQVPHLAE AALGCFKDEM LHLLTKKRIG FQFQFQQFGM 180 ANTATTAPNN VPSTSVKHED NKDETIEKIK YGLSRAIKEP DILNPIKNWD TSNFPENGGF 240 NYNFASLLNE GEGSPWNQSL CSGSTCTAGG EIQQNKRIIS NENCGENSEG GKEIVTRNGS 300 TTMFNSDCVL WDISSDDLMN PMV |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT5G56110.1 | 1e-114 | MYB family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OIS99156 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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