PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIS99268
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 135aa    MW: 15249.7 Da    PI: 11.3731
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIS99268genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.87e-191559246
              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
              +i+n++n q +fskR +g++KKA+EL++L +aeva+++fs   k+
  OIS99268 15 KIQNERNLQASFSKRHAGLFKKASELCTLSGAEVALVVFSRATKF 59
              599*************************************98876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    
MGRKSNGRKK VDMVKIQNER NLQASFSKRH AGLFKKASEL CTLSGAEVAL VVFSRATKFT  60
RLATPLWILV MDRFLAGNSP PNIDVPNQLI EAHRNASVRE VNMEEMIDKE GRLEMARRRG  120
EVLQGIRRGA TSDKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-29M-type_MADS family protein