PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIS99272
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SBP
Protein Properties Length: 136aa    MW: 15633.4 Da    PI: 8.0624
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIS99272genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.63.2e-4252127277
               -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
       SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
               Cq+e+C+ad++ ak yhrrhkvCe+h+kap+vl+ gl+qrfCqqCsrfh+l efDe+krsCrrrLa+hnerrrk++
  OIS99272  52 CQIEDCTADMAYAKAYHRRHKVCEFHAKAPAVLIGGLRQRFCQQCSRFHQLGEFDEAKRSCRRRLAGHNERRRKSS 127
               **************************************************************************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    
METSKWEEKR SMTEEEDDEE DEDVVEDNKR KRVLTRSGRK VPGGEGSKLP SCQIEDCTAD  60
MAYAKAYHRR HKVCEFHAKA PAVLIGGLRQ RFCQQCSRFH QLGEFDEAKR SCRRRLAGHN  120
ERRRKSSCDS PGEGSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.12e-44SBP family protein