PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIS99278
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 333aa    MW: 36957.9 Da    PI: 7.0348
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIS99278genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.5e-10245288755
               HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               ++ ++RR+ri +++  L+el+P+       K++ +++LekA+ Y+k Lq
  OIS99278 245 IAAKNRRERISERLKILQELVPNG-----SKVDLVTMLEKAISYVKFLQ 288
               5679*******************5.....5******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    
MSMALAKEHI MNDTKMGLVD NYEYYEGEFG MNDHSSPELY HGINEETPKS VFEESENPEK  60
TSPNIAKNFA ISSSSSLSSP SSSNSNGHSV ISFKGGYGGN FMHSANGSLL SFEQSERFCP  120
NPRMNSNKVE CSVWEDNNLR YNNTNNYQNS LTSKGSSNTS PRVLINENSK NIQRANSYGN  180
SNAIPFGWLN SEANATVEDL EREESRFNKR PCMEESMQTN KKQCTAGSKK AKSNTSVATK  240
DPQSIAAKNR RERISERLKI LQELVPNGSK VDLVTMLEKA ISYVKFLQVQ VKVLATDEFW  300
PTQGGKAPDI SQVKDAIDAI LATQRDRNSS SKG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.12e-59bHLH family protein